BrainChildren Chemistry
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1236. a-ARM: Automatic Rhodopsin Modeling with Chromophore Cavity Generation, Ionization State Selection, and External Counterion Placement
1286. Simultaneous Solvent and Counterion Effects on the Absorption Properties of a Model of the Rhodopsin Chromophore
1399. Electrostatic control of the photoisomerization efficiency and optical properties in visual pigments: on the role of counterion quenching
1444. Retinal counterion switch mechanism in vision evaluated by molecular simulations
1504. Counterion displacement in the molecular evolution of the rhodopsin family
156 Highly conserved glutamic acid in the extracellular IV-V loop in rhodopsins acts as the counterion in retinochrome, a member of the rhodopsin family
1584. Solid state 15N NMR evidence for a complex Schiff base counterion in the visual G-protein-coupled receptor rhodopsin
245. Simultaneous Solvent and Counterion Effects on the Absorption Properties of a Model of the Rhodopsin Chromophore
369. Electrostatic Control of the Photoisomerization Efficiency and Optical Properties in Visual Pigments: On the Role of Counterion Quenching
440. Photointermediates of the Rhodopsin S186A Mutant as a Probe of the Hydrogen-Bond Network in the Chromophore Pocket and the Mechanism of Counterion Switch
447. Retinal Counterion Switch Mechanism in Vision Evaluated by Molecular Simulations
464. Conformational Changes in the Photocycle of Anabaena Sensory Rhodopsin: Absence of the Schiff base counterion protonation signal
495. Ligand Twisting and Counterion Switching in Rhodopsin Activation
51 How the Counterion Affects Ground- and Excited-State Properties of the Rhodopsin Chromophore
525. Complete-active-space self-consistent-field/Amber parameterization of the Lys296-retinal-Glu113 rhodopsin chromophore-counterion system
544. Counterion displacement in the molecular evolution of the rhodopsin family. x [Erratum to document cited in CA140:352282]
548. Counterion displacement in the molecular evolution of the rhodopsin family
549. The Nature of the Complex Counterion of the Chromophore in Rhodopsin
555. Exploring the Opsin shift with ab initio methods: Geometry and counterion effects on the electronic spectrum of retinal
64 Highly conserved glutamic acid in the extracellular IV-V loop in rhodopsins acts as the counterion in retinochrome, a member of the rhodopsin family
68 Solid State 15N NMR Evidence for a Complex Schiff Base Counterion in the Visual G-Protein-Coupled Receptor Rhodopsin
844. Changing the location of the Schiff base counterion in rhodopsin
889. Glutamic acid-113 serves as the retinylidene Schiff base counterion in bovine rhodopsin
96. a-ARM: Automatic Rhodopsin Modeling with Chromophore Cavity Generation, Ionization State Selection, and External Counterion Placement
Advancements in Geiger-Müller counter technology
Advancements in Scintillation Counters
Aerosol Optical Particle Counters
Aerosol Particle Counters
Alpha particle counters
Anti-counterfeit Labels
Anti-Counterfeiting
Anticounterfeiting Measures
Applications of Geiger-Müller Counters
Asymmetric Counteranion-Directed Catalysis
Asynchronous Counters
Authentication and Anti-Counterfeiting
Back EMF & Counter EMF
Back EMF & Counter EMF of DC Motors
Back EMF & Counter EMF of DC Motors, Internal Resistance
Back EMF & Counter EMF of DC Motors, Internal Resistance: The Organic Chemistry Tutor
Binary Encounter Theory
Biochemistry (1999), 38(22), 7195-9, 1584. Solid state 15N NMR evidence for a complex Schiff base counterion in the visual G-protein-coupled receptor rhodopsin
Bioinspired Encounters
Black Light Counterfeit Detection
Block and Counter Techniques
Chiral Counterions
Clockwise and Counterclockwise
Commonly Encountered Substituents - YouTube
Condensation particle counters
Counter Electrode
Counter EMF
Counter Flow Condensers
Counter Flow Evaporative Condensers
Counter Ions, Leveling Effect, Solvating Effect
Counter-current extraction
Counter-Diffusion Method
Counter-Grab Techniques
Counter-Illumination
Counter-Rotating
Counteracts the effects of parathyroid hormone
Counterbalancing
Countercurrent Chromatography (CCC)
Countercurrent Heat Exchange
Counterfeit goods
Counterfeit substances
Counterflow
Counterflow design
Counterion Effects
Counterion-induced inversion mechanism
Countermeasures and defenses
Counterparty Risk
Counters
Countershading
Countertop Filters
Design Principles for Novel Encounters
Detection and Countermeasures
Drug-Encounter Complexes
Effect of Counter Ions
Effect of counterion on basicity
Effect of Counterions
encounter complex
Encounter Control
encounter-controlled rate
Encounter-Controlled Rate Incidents and Accidents
Encounter-Controlled Rate Techniques
Encounter-Controlled Rate Training and Safety Measures
Equimolar Counter Diffusion (EMCD) - YouTube
Equimolar Counterdiffusion (EMD)
Equimolar Counterdiffusion Example
Evasion Techniques and Countermeasures
Evolution of Geiger Counters
Examples of neutral solutions we encounter daily
Fault Attacks and Countermeasures
Fluorescent Dyes in Security and Anti-Counterfeiting
From Static to Dynamic Encounters
Gas Flow Proportional Counters
Gas Proportional Counters
Gas-filled Geiger-Müller counters
Geiger Counter
Geiger Counters
Geiger-Muller counter
Geiger-Müller counter
Geiger-Muller counters
Geiger-Müller Counters
Hot spiced rum and the problem of counterfeit spirits
Implementation and Countermeasures
Infrared Countermeasures
Journal of the American Chemical Society (2009), 131(14), 5172-86, 1399. Electrostatic control of the photoisomerization efficiency and optical properties in visual pigments: on the role of counterion quenching
Lasting Encounters between Aspiring and Distinguished Scientists (LEADS)
Limitations and Countermeasures
Measuring radioactivity without a Geiger counter... how did Marie Curie do it?
Microchannel Counter Flow Condensers
Miniaturization of Geiger-Müller counters
Multi-wire proportional counters
Non-Aromatic Counterexamples
Non-Lethal Countermeasures
Notable Geiger-Müller Counter Incidents
Optical particle counters
Over-the-Counter (OTC) Aspirin
Over-the-Counter (OTC) Trading
Over-the-counter antihistamines
Over-the-counter availability
Over-the-Counter Drugs
Over-the-counter Medications
Over-the-Counter Pain Relief
Over-the-counter Pain Relievers
Over-the-counter products
Over-the-counter Tablets
Over-the-counter treatments for swimmer's ear
Over-the-Counter vs. Prescription
Particle counters
Prescription vs. Over-the-counter
Presence of counterions
Problems Encountered
Proportional Counters
Psychedelic alkaloids and the counterculture movement
Reactive Encounters
Rebuttals and Counterarguments
Resistance and Countermeasures
Role of Counterions
Role of Solvent and Counterions
Scintillation Counter
Scintillation Counters
Security and anti-counterfeiting measures
Severe Weather Encounter
Side-Channel Attacks and Countermeasures
Subversions and Counter-Heterotopias
Synchronous Counters
Teacher plays league: When they hard counter pick against my blitz
The Automatic Rhodopsin Modeling (ARM) protocol, has recently been proposed as a tool for the fast and parallel generation of basic hybrid quantum mechanics/mol. mechanics (QM/MM) models of wild-type and mutant rhodopsins. However, in its present version, the input prepn. requires a few hour long user's manipulation of the template protein structure which also impairs the reproducibility of the generated models. This limitation, which makes the model building semi-automatic rather than fully automatic, comprises four tasks: the definition of the retinal chromophore cavity, the assignment of the protonation states of the ionizable residues, the neutralization of the protein with external counter-ions and, finally, the congruous generation of single or multiple mutations. In this work, the authors show that the automation of the original ARM protocol can be extended to a level suitable for performing the above tasks without user's manipulation and with an input prepn. time of minutes. The new protocol, call
Therapeutic Presence: Its Contribution to the Doctor-Patient Encounter
Types of Geiger-Müller Counters
Weather Conditions and Encounter-Controlled Rate
Wildlife Encounters in Urban Areas
Working of the Geiger-Müller counter
Xenon Gas Scintillation Proportional Counters